HsaEX0025786 @ hg19
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:34205474-34238151:+
Coord C1 exon
chr18:34205474-34205712
Coord A exon
chr18:34232533-34232892
Coord C2 exon
chr18:34238038-34238151
Length
360 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGCTGGCCCAACAGCAA
3' ss Score
7.04
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTGGCGCTCAGGCACGAGGATGGCGATGAGACCACGGAGCCACCCCCCAGTGGGTGCCGGGACCGGAGGAGGGCCAGCGTGTGTTCCAGTGGCGGAGGCGAGCACCGGGGCCTGGACCGCAGAAGGAGCCGCAGGCACTCGGTGCAGAGCATCAAGAGCACCCTGTCGGCCCCCACCAGTCCCTGCTCCCAGTCAGCTCCCAGCTTCAAGCCCAACCAAGTGCGAGATCTGCGTGAAAA
Seq A exon
CAAGGTCGGCGCTGCCTCAGGGCAGAGCCCCACTGGAAGGGATGCTGCTCCCAAGAGCTCTGCCCTCCCTGCTGTCTCGAATGCCAGCTCGCAGGGAAAGCCGCTTCTGGTTGGCACTGCAGGCGGGACCACCTGGCACAGTGGGTCCTCTGGGTCTGAGGCCACCCCATCTGCCCTCCTGTCACCCCCTGCCTCAGCTGCTCGGCCCTCCTCCGCCACACCAGGCTCCCTGAAGGTGTCACCGACCATAGACAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAGGACTCCTCCCTGTCCACCAAGGAGAAGGAAGCAGAGTCCCAGAAGGAAAACAG
Seq C2 exon
ATACAGCAATTTTGGCAATAACTCTTATCACTCCTCAAGACCCTCATCTGGATCCAGTGTGCCCACCACCCCCACATCATCCGTCTCACCCCCACAGGAGGCCAGGTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775_MULTIEX4-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.939 A=0.876 C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGGATGGCGATGAG
R:
CTTTCCAACCTGGCCTCCTGT
Band lengths:
342-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)