BtaEX0014643 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20784954-20812841:-
Coord C1 exon
chr24:20812600-20812841
Coord A exon
chr24:20790550-20790879
Coord C2 exon
chr24:20784954-20785067
Length
330 bp
Sequences
Splice sites
3' ss Seq
CTCCGCTGCTGCCGAAGCAGCGA
3' ss Score
0.9
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTGGCGCTCCGGCTGGAGGATGGGGATGAGACGGCAGAGCCGCCCCCCAGCGGGTGCCGTGACCGCAGGCGGGCCAGTGTGTGCTCCGGAGGCACGGGCAGTGAGCCCCGGGGCCTGGACCGAAGGCGGAGCCGCAGGCACTCGGTGCAGAACATCAAGAGCCCCCTGTCGCCCCCGTCCAGCCCCTGCTCCCTGTCGGCTCCTGACTTCAAGCCCAGTCAAGTGCGAGATCTCCGGGAAAA
Seq A exon
CGAGGCCCGCCTTGCCTCGGAGGTCGCCGCCACCGCCACCGAAAAGGATGCAGCCCCCGCCGCTGCCTCGCCGGGGAAGCCGCTGGCGGCCAGTGCTGAGGCGGGGACCTCCTCGGGCAGAGGGTCCTCGGGGCCCGCCCTGCGGCCGCCCCCCAGCCCCACCCCGGCCTCTTGGCCGTCCTCCAGTGCGCCTGCGCCCCCGAAGGCGTCACCCAGCAGAGAAAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAGGATTCGCCTTTGTCCACCAAGGAGAAGGAAGCCGAGTCCCAGCAGGAAAGCAG
Seq C2 exon
ATACAGCAGCTTTGGCAACAACTCTCATCACTCCTCGAGACCTTCACCTGGATCCAGTGTGCCCACCACCCCCACGTCATCCGTCTCACCCCCACAGGAGGCCAGGCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581_MULTIEX1-2/6=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.973 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061003fB2789
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGAGGATGGGGAT
R:
CCTCCTGTGGGGGTGAGAC
Band lengths:
334-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development