BtaEX0014644 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20784954-20812841:-
Coord C1 exon
chr24:20812600-20812841
Coord A exon
chr24:20789851-20789925
Coord C2 exon
chr24:20784954-20785067
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGTTTTCCTTCCTTTCACAGTTC
3' ss Score
9.78
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTGGCGCTCCGGCTGGAGGATGGGGATGAGACGGCAGAGCCGCCCCCCAGCGGGTGCCGTGACCGCAGGCGGGCCAGTGTGTGCTCCGGAGGCACGGGCAGTGAGCCCCGGGGCCTGGACCGAAGGCGGAGCCGCAGGCACTCGGTGCAGAACATCAAGAGCCCCCTGTCGCCCCCGTCCAGCCCCTGCTCCCTGTCGGCTCCTGACTTCAAGCCCAGTCAAGTGCGAGATCTCCGGGAAAA
Seq A exon
TTCCTCTGATTCTCTCCATCTGAGCACGTATTCTGCCTCCGAGCCTTACAACTTCCGGTCTTTCTCTTCTAATAG
Seq C2 exon
ATACAGCAGCTTTGGCAACAACTCTCATCACTCCTCGAGACCTTCACCTGGATCCAGTGTGCCCACCACCCCCACGTCATCCGTCTCACCCCCACAGGAGGCCAGGCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581_MULTIEX1-3/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.885 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061003fB2790
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTGCAGAACATCAAGAGC
R:
GTGGTGGGCACACTGGATC
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development