GgaEX1066309 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr2:83359162-83378744:+
Coord C1 exon
chr2:83359162-83359400
Coord A exon
chr2:83375903-83376280
Coord C2 exon
chr2:83378619-83378744
Length
378 bp
Sequences
Splice sites
3' ss Seq
ACAATATTTTCCTCCTGCAGTGG
3' ss Score
8.82
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
ATGACCCTGAGGCACGAAGATGGCGATGAGACCGCTGACCCCCCTCCCAGTGGGCGCAAGGACAGAAGAAGGGCCAGTCTGGGTGGCAGTGAGCGAAGGGGTCTGGAGCGCCGACGGAGCCGCAGGCACTCAGTACAGAACGTCAAAAGCACTTTATCAGCTCCCGCCAGTCCATGCAGTCAGTCAAACCCCAGCTTCATGCTAGGCCACGGACAGCGCGTGGATGATCTCAGTGAGAG
Seq A exon
TGGGGTCCCAGGTGCACAGGAAGCTGTGAAAGAAAACTTTTCACAGTGTTGTGAATCTTCAGCCACCTCCAGTGCCATTTCTCAAGCTGAGAGGCCTCTCCCCTGCTCTAGAGTAAAGAGCTCTTCTAGCAGCACCTCTTTTGTGCCTGATTCATCTGTCTCTCATCATAATTCTATTATTTCACCACCATCTTCACCAGCAGCAGTTTTGCTAAGCTCTTCCCAAAATTCATCAGCATCCATTACTCCAAAGGCATCTCCAACGGTAGAGAAATTGCCTTATGTACCACATACTCCTTTTCACCTCTTCTCATATGACTTTGAAGAGTCTCCAGCATCTGTGAAAGAAAAGGAAGCAGAGGTGATGAGGGAAAACAG
Seq C2 exon
ATACAATAGCTATGGCAGCAACTCTTACTCTTCTCCGCGACCTTACTCTGGTTTGAGTGCTCCTACAACACCCACTTCTCGTTATGGGACAACTCTCTCACCACCTCAGGAGTCCAAGTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_MULTIEX1-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAAGATGGCGATGAGACC
R:
TTGGACTCCTGAGGTGGTGAG
Band lengths:
344-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]