GgaINT1031086 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:83375903-83378744:+
Coord C1 exon
chr2:83375903-83376280
Coord A exon
chr2:83376281-83378618
Coord C2 exon
chr2:83378619-83378744
Length
2338 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
TATACTCCTCACTTCTTCAGATA
3' ss Score
8.91
Exon sequences
Seq C1 exon
TGGGGTCCCAGGTGCACAGGAAGCTGTGAAAGAAAACTTTTCACAGTGTTGTGAATCTTCAGCCACCTCCAGTGCCATTTCTCAAGCTGAGAGGCCTCTCCCCTGCTCTAGAGTAAAGAGCTCTTCTAGCAGCACCTCTTTTGTGCCTGATTCATCTGTCTCTCATCATAATTCTATTATTTCACCACCATCTTCACCAGCAGCAGTTTTGCTAAGCTCTTCCCAAAATTCATCAGCATCCATTACTCCAAAGGCATCTCCAACGGTAGAGAAATTGCCTTATGTACCACATACTCCTTTTCACCTCTTCTCATATGACTTTGAAGAGTCTCCAGCATCTGTGAAAGAAAAGGAAGCAGAGGTGATGAGGGAAAACAG
Seq A exon
GTAGATTTTATACAGCTGACATGAATTTTTAGATAAATGAATAACACCTTTCAAGAGTTTTATAGTGGTAATAATGTTGTATTATTTCCAGAACTTACTGTATTAGTTTTAGTCATGTAAGCCTGTGTTTTGATTTGATTGATATTCTTCCCTTGCCTCTGTTGCTTTCATCTCATCTAGTTCCTAGGCTCCTCTATGCAGCAGTAGATAAAGAACATGATTTGGGAGATCACATAAAAGAGCATCATTGTGTTCTGATTTAAACCAATGTAATTTGCAGGCATGATTTCATGAAAACGAATGGAGCTTTTAAGACATAAAACTGAGAGTGATTGGATCAGTACTTGGAATTACAGCATTACAGAATTGTAGGGGTTGGAAGGGGCCTCTGGAGATATCTAGTCCAACTTCCTTGCTAAAGCAGGTTCCCTAGAGTGGGTTGCACAGGAAAGCAAGTTCTCTCCAATTTAGTGAGAGTTATTGTTGCGCTAATTGAAATTCCTTGGTCTGCAAAAGGATTCTGCACTGTATCAGCTTTTTCAAGTGGCAAAGCAGAAGAAAAGTAAACACAATAATTGATAAGAAGGTCTTGTAGCATTTGATTGAAACTGGTGAAACTTTCTGTTAGTGTTTAGAACATAGTGAGTGAGCTCTGATATTCTCTTGGGACAAATGAGCTTTTCCTTCTCACTCAGTATGGCCACAGGCAGGATGTTTTGTGAGTTGAGTATGCTGGAGAGAAGACCTGTGTGAGGTCTGTGACTACAGGACAGATCTGTCCTGCCTAGCTGCACAGCCCTCCACCAGGGTTGTTTCTCTAGTTGGTTTTCTTTTAGGGCAAGACTTCCATGAAGGCAGTCATTTCCCATTCAGCAAAATTCCTTTTGTAGCTTAGAAATATTCATAGCAGCATTTTTTCCCTAAATGACTCCACACTTCTTGGACTTGCAGCATGGTGCCTGGGATTTGTATTCAAGAACGTAAAACTGGGCTTTCACAGAAAAGGAGCATATTCTCTAAAGCACTATCCCTTGCATTATTAAAAAAGGCTAAATTAAATTTATTTTGTTTTTAACATTGGCCTTGGCAATTAGCAATGCTATTGTACCCTTAGGAGTTGAAACTTTGCATGACTAGATGTGTGTGTTAAATGGAGCTGAAGGAAAACAACCAGTATTTTCAAATAAAATTGCTGAGTTAAGAGAAATTATTATGTGCTGATGTGCATGGGAGAAGAAGCAGCCCAGAAAGGATAAGGTAAAAGGGGATCTATTGTACGTTATGAATTGTAATGAAGAAAATGATGGTGCTCTTTCCTCTGAACCGAGTTTTGAATCAGTTGGCCTTGTGAAATGTTTCACCTACCATGCATCATATGCTTTCCAAAAGGGAAAATGGTAATTTGTGTAAAAAGAAATGTTATCATTTTTACAAATCAGGAATCTCTGTGCCTCCAAGAAATGCTGTTTAAATACGGTGGTTAAAAGGCACATAAAAGCAACACAACTGCTGTTCCTGCTCAGTACAGGAGCCAGGTTGAAAACGTTGATACAAAGGACTCTGGGGAGGTGGCCATTCCAAGAGCCCTGGAAGCAATTTCTCTTTGATCAGCAAACTCGCAATGAAATTAAGCGGTTATGTGTGGTTGTTTTTCTTTTTTTTTCCTTTCTTTCCCTTTTTTTTTTTTTTTTTTTAATAGAGGGAATGGCTGGTAGAAATTCCTAAAGCCTTTCTTCCAGAAACATGTAATTTTAACCACGGTGATGATTTTTTACAGACATTGTAAGACATGGCACACAAGCTATGACTTATGATGGAGGAGGGGAAAGAAAATGCTGCCTGCTTTAATTGGAAAGCATGTGGATGCTTTGTATTTATAATGCAAACATTCACAAATTGTATATGTCCCTGTTCAGAGGATACTCAGGAATGCTGTTGTTTGCGTTAATTTTCCTAGGAATTGCTATTGCTGACATGGACTTCTGGGAGTCCCAAAAAGCTCCCAAAACAGCTAATAAATTTGAGTGACTTAGCAGTAATTTAAGTATTGCTGCTCAGAGTAGTCACTTTAGAGGATCATTCTGATCTGTCATTATTTTCCTTAACAATAGTTTAGTATTTGAATTAAGTATTTCTGTGACATAGTTTATATTAAAGTGAAATGATAGGTACATATTTTGAAGCTGAGGTTAGAACAATATTTTCAGAAGGTAGATAGATGAGAATGTCTGGGATATGGTATCATTGCCAAACTCTAGACAAGGAGATTGACTATTTCATACTGCTTGCTGATGGATTTTTTTTCTCTCCCTTTCTACTATACTCCTCACTTCTTCAG
Seq C2 exon
ATACAATAGCTATGGCAGCAACTCTTACTCTTCTCCGCGACCTTACTCTGGTTTGAGTGCTCCTACAACACCCACTTCTCGTTATGGGACAACTCTCTCACCACCTCAGGAGTCCAAGTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124:ENSGALT00000037064:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]