GgaEX0019785 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83359162-83378744:+
Coord C1 exon
chr2:83359162-83359400
Coord A exon
chr2:83373551-83373652
Coord C2 exon
chr2:83378619-83378744
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTGGTGTGACCTCAGAGA
3' ss Score
5.43
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATGACCCTGAGGCACGAAGATGGCGATGAGACCGCTGACCCCCCTCCCAGTGGGCGCAAGGACAGAAGAAGGGCCAGTCTGGGTGGCAGTGAGCGAAGGGGTCTGGAGCGCCGACGGAGCCGCAGGCACTCAGTACAGAACGTCAAAAGCACTTTATCAGCTCCCGCCAGTCCATGCAGTCAGTCAAACCCCAGCTTCATGCTAGGCCACGGACAGCGCGTGGATGATCTCAGTGAGAG
Seq A exon
AGAGGAGGAGGAGTATGAAGAAGAGGAAGAAGAACAGCCAGTCACAGAACCCAATACTGAGGATGAGGGGGAGGAAGAGACCAGTAGGCAGGTCAAAGACAG
Seq C2 exon
ATACAATAGCTATGGCAGCAACTCTTACTCTTCTCCGCGACCTTACTCTGGTTTGAGTGCTCCTACAACACCCACTTCTCGTTATGGGACAACTCTCTCACCACCTCAGGAGTCCAAGTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_MULTIEX1-2/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.984 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACAGAAGAAGGGCCAGT
R:
TGGGTGTTGTAGGAGCACTCA
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]