GgaEX0019784 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83359162-83378744:+
Coord C1 exon
chr2:83359162-83359400
Coord A exon
chr2:83360765-83360851
Coord C2 exon
chr2:83378619-83378744
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCTATTGGCTGGGTGTTTAGCGA
3' ss Score
1.58
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ATGACCCTGAGGCACGAAGATGGCGATGAGACCGCTGACCCCCCTCCCAGTGGGCGCAAGGACAGAAGAAGGGCCAGTCTGGGTGGCAGTGAGCGAAGGGGTCTGGAGCGCCGACGGAGCCGCAGGCACTCAGTACAGAACGTCAAAAGCACTTTATCAGCTCCCGCCAGTCCATGCAGTCAGTCAAACCCCAGCTTCATGCTAGGCCACGGACAGCGCGTGGATGATCTCAGTGAGAG
Seq A exon
CGAGCTGGAGGCCAAGAGCCCCACGGTCTTACAGACAGATGACAAGGATGACAGTGCGTCTGAGACTGAGTTTAAAGCATCTTCAGT
Seq C2 exon
ATACAATAGCTATGGCAGCAACTCTTACTCTTCTCCGCGACCTTACTCTGGTTTGAGTGCTCCTACAACACCCACTTCTCGTTATGGGACAACTCTCTCACCACCTCAGGAGTCCAAGTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_MULTIEX1-1/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.984 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000037064fB2384
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACTTTATCAGCTCCCGC
R:
TGGGTGTTGTAGGAGCACTCA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]