GgaEX0019785 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85620290-85639872:+
Coord C1 exon
chr2:85620290-85620528
Coord A exon
chr2:85634679-85634780
Coord C2 exon
chr2:85639747-85639872
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTGGTGTGACCTCAGAGA
3' ss Score
5.43
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATGACCCTGAGGCACGAAGATGGCGATGAGACCGCTGACCCCCCTCCCAGTGGGCGCAAGGACAGAAGAAGGGCCAGTCTGGGTGGCAGTGAGCGAAGGGGTCTGGAGCGCCGACGGAGCCGCAGGCACTCAGTACAGAACGTCAAAAGCACTTTATCAGCTCCCGCCAGTCCATGCAGTCAGTCAAACCCCAGCTTCATGCTAGGCCACGGACAGCGCGTGGATGATCTCAGTGAGAG
Seq A exon
AGAGGAGGAGGAGTATGAAGAAGAGGAAGAAGAACAGCCAGTCACAGAACCCAATACTGAGGATGAGGGGGAGGAAGAGACCAGTAGGCAGGTCAAAGACAG
Seq C2 exon
ATACAATAGCTATGGCAGCAACTCTTACTCTTCTCCGCGACCTTACTCTGGTTTGAGTGCTCCTACAACACCCACTTCTCGTTATGGGACAACTCTCTCACCACCTCAGGAGTCCAAGTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'11-19,'11-17,13-19
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.977 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACAGAAGAAGGGCCAGT
R:
TGGGTGTTGTAGGAGCACTCA
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event