MmuEX0019237 @ mm9
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25160292-25186670:+
Coord C1 exon
chr18:25160292-25160533
Coord A exon
chr18:25179163-25179258
Coord C2 exon
chr18:25186566-25186670
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTGGTCTTGTCTCAGGGA
3' ss Score
9.11
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTGGCACTCAGGCATGAAGATGGTGATGAGACAGCTGAGCCACCCCCCAGTGGGCACCGGGACCGGAGGAGGGCCAGCATGTGTTCTGGTGGCACTGTGGGTGAGCAACAGGGCCTTGACCGCAGAAGGAGCCGTAGACACTCAATCCAGAATATCAAGAGCCCACTGTCAGCTCCCACCAGCCCCTGCTCCCCGTCTGTTCCTGCCTTCAAACCCAGCCAAGTTCGAGACCTCTGTGAAAA
Seq A exon
GGATGAGGAGGAGGAGGAGGAAGAAGAACAGCCAATCACGGAGCCCAATTCAGAGGAGGAGAGAGAGGACGATGCCCAGTGTCAGGGCAAGGACAG
Seq C2 exon
ATACAGCAATTTCAGCAGCAACTCTTTCCAATCCTCCAGACCCTCTCCTGGACCTAGTGGGTCCCCATCTTATGCATCATCCTTCTCATCCCCACAGGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=1.000 C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAGCCGTAGACACTCA
R:
ACTAGGTCCAGGAGAGGGTCT
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: