RnoEX0036006 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17196570-17218655:+
Coord C1 exon
chr18:17196570-17196811
Coord A exon
chr18:17216325-17216417
Coord C2 exon
chr18:17218299-17218655
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTGGTCTTGTCTCAGGGA
3' ss Score
9.11
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTGGCACTGAGGCATGAAGATGGTGATGAGACCGCCGAACCACCTCCCAGTGGGCACCGGGACCGGAGGAGGGCCAGCATGTGTTCTGGTGGCACTGTGGGCGAGCAGCAAGGCCTTGACCGCAGAAGGAGCCGTAGACACTCAATCCAGAATATCAAGAGCCCACTGTCCGCTCCCACCAGCCCCTGCTCCCAGACGGTTCCTGCCTTCAAACCCAGCCAAGTTCGAGACCTCTGTGAAAA
Seq A exon
GGATGAGGAGGAGGAAGAAGAAGAACAGCCAATCACGGAGCCCAATTCAGAGGAAGAGAGAGAGGACGATGCCCAGTGTCAGGGCAAGGACAG
Seq C2 exon
CAAAGCCAGCTCTGCCTCCAAGCAGAGCCCTCCTGAGAAGGATGCTACTCCAGAGAGTTCTACACTCCGTACCACCTCAAGTCCCACCTCACAGGGAAGGTGGCTTCCGGCCAACCCAGCAGCACAGAGCCCGGTGCTTGCTGGGACCTCTGGGCCTGAGGCCAGCCGGCCTGCCGCTCGCTTACCACCTCCCAGCCCTGTCTTGGCTCCTCGGCCGTCCACCGCACCAAAGGTGTCTCCCACCATAGACAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAAGATTCACCTCTCCTCACTAAGGACAAGGGAGGAGACTCTCAGACGGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'36-30,'36-29,39-30
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=1.000 C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAAGAGCCCACTGTCCGC
R:
AGGTGGGACTTGAGGTGGTAC
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]