RnoEX0036007 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17216325-17224348:+
Coord C1 exon
chr18:17216325-17216417
Coord A exon
chr18:17218299-17218655
Coord C2 exon
chr18:17224244-17224348
Length
357 bp
Sequences
Splice sites
3' ss Seq
CCGCCTTCCTGGGTCAACAGCAA
3' ss Score
4.81
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GGATGAGGAGGAGGAAGAAGAAGAACAGCCAATCACGGAGCCCAATTCAGAGGAAGAGAGAGAGGACGATGCCCAGTGTCAGGGCAAGGACAG
Seq A exon
CAAAGCCAGCTCTGCCTCCAAGCAGAGCCCTCCTGAGAAGGATGCTACTCCAGAGAGTTCTACACTCCGTACCACCTCAAGTCCCACCTCACAGGGAAGGTGGCTTCCGGCCAACCCAGCAGCACAGAGCCCGGTGCTTGCTGGGACCTCTGGGCCTGAGGCCAGCCGGCCTGCCGCTCGCTTACCACCTCCCAGCCCTGTCTTGGCTCCTCGGCCGTCCACCGCACCAAAGGTGTCTCCCACCATAGACAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAAGATTCACCTCTCCTCACTAAGGACAAGGGAGGAGACTCTCAGACGGAAAACAG
Seq C2 exon
ATACAGCAACTTCAGCAGCAGCTCTTTCCAGTCCTCCAGACCCTCTCCTGGACCTAGTGTGTCTCCATCTTCCGCATCGTCCTTCTCATCCCCACAGGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'39-31,'39-30,40-31
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.925 C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGGAGGAGGAAGAAGA
R:
TCCTGTGGGGATGAGAAGGAC
Band lengths:
192-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]