RnoINT0061057 @ rn6
Intron Retention
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17218299-17224348:+
Coord C1 exon
chr18:17218299-17218655
Coord A exon
chr18:17218656-17224243
Coord C2 exon
chr18:17224244-17224348
Length
5588 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
CCAACCTCCGTGCCTTTTAGATA
3' ss Score
8.69
Exon sequences
Seq C1 exon
CAAAGCCAGCTCTGCCTCCAAGCAGAGCCCTCCTGAGAAGGATGCTACTCCAGAGAGTTCTACACTCCGTACCACCTCAAGTCCCACCTCACAGGGAAGGTGGCTTCCGGCCAACCCAGCAGCACAGAGCCCGGTGCTTGCTGGGACCTCTGGGCCTGAGGCCAGCCGGCCTGCCGCTCGCTTACCACCTCCCAGCCCTGTCTTGGCTCCTCGGCCGTCCACCGCACCAAAGGTGTCTCCCACCATAGACAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAAGATTCACCTCTCCTCACTAAGGACAAGGGAGGAGACTCTCAGACGGAAAACAG
Seq A exon
GTAGACTGGCTTGCAGTGAGGCCTGCGTGTTATTAACCCAAGGGCAGAGGACACGACTGTGTCCCACGGCTCGCTCTTTTGCTTGGTTGCATGGACTCACTCAGACACAGAGCCACTGTGGCTAAACTATCTCTTTGACCACTGACTCCGTGGGAACAGGGAGATGCAAAAGTCACCTGTGTGAGCTAGGCTCTTTGGTTTAACGTAACTACTAATGTGTTTTTAGAGCTACAGTCTGTCAGGGTCTGTGTGTCCATCCCCTCATTCAGCACGGCCTTTCTGGCCTGCAAGGGGAGGGGAGGGCAGCACCCTCTGCCTGCAGCATGGCCAGTGTGCCGCCCTCTCCGTCCAGGTTCCCCCAACCCCTCCCACTGAGCTGCTGCCGCAGAGTCTGACTTCTGATCTTTCTCTTCTAATAACTGGGCATCCTAACTGTACTTTCCTTATCCTTCCTGTAGCTTCCGGCTTTGTTTCCTCTCATGTGGTTTTTGTGTTTGCTAAGGCTGCCCGTTAATGTCACAGAGTTATAGTTTGAACCAATTCCTGGAGCCTTAAGATGATCACGTCATCTAATTTTGAGCATTCAGGTATTGTAATAAGAAATCGCCCTGGTGGCAGATTGGAAGCGTAGCCGTTGTTTGCCTGTCGTAGAGGTAACTGCCTTCACTGTTGCCCCACGCTGGAGTAGGAAGTAGGGATATTTGTATATATTTTTACTTTTCTAATGTCTGAATTGGATTTTTAAATTTTCTTTTATTACATTTATTTATTTATTGGGTGGGGAATGTGTGTCGAGTCAAAGGGGAGCTTGTGGACCTTGGTTCTCGCCTTGATCAGAGCGGTGTCAGACTCTCTGTGAGTCCTGGGGATTGGACTTGGGTCGTCAGGCCTGGCAACAAGTGCCTTTACCCATGGAATCACCTCATCAGCCTCTAAAAATTGCCTTTTAAGTGGTAAAATAAACAGGTAAATCTATTCTAATAATATATATCTTTCAACTTTCTATATCCGTGACTGTATCCACAATCATTGATTATTGTAAAGCCCTCCCTCTTAGAATAAAAATGCTAGGGCAGACTTTGCTGAGCATTTATTATGAGTCTGCCGCTCTGTTTCCCATGATACTTTGCTGCTTCAAAGTATCACTTAGTCCTTAAGAGGCAGGTTCTGTCACTAGTTCCTATTTACGTCAGGAGCCCGAGGCTCAGAGAGACACAGTAACTTGGCCTGAGTCTGTCTGCTAGTGTGTGGAGAGGTGGTTTTAGGTTCACCTATACAGTTTGTCCCACTGTAGCTCCATGGCTTTCCTCCTGGGCTTGCAATGCCTCTGTTCTTCAGACAGAGTCTTGTCAACAAGGGTAAAGCAGTCACCAGAGCCTGTTTTATGGGGACCTCCAAACCTCAGTGACAGGCAAGGATTTTAACTTTGTTTCAAAGGAAACTTTATAAACCTTGACCAAGACGTAGCTCTTCCCTCCATGAAATGACCCATCTTCAGGGCCCTCAGACCTTCCGTTTAATAACTGAAGGGTTCATCATCTGTGACTGGCAACATCTTTGGTTATATGCAATCTAGAAGAATCTTGGAGTTTCCCTCAAGGTTTTAAGTAGCTTGTGCAAAGTTTTTTTTTTTTAATGAATTGAAATAGTTATAAGAGAATTTAGTTTGTGTATTGTCTAAATGTTTACATTAATGTTAGAGCCTTCCCTTTAACTTAGAACCTCTATTTTTCATGGAGTTGGTATTTACAAGTATCACTTAACCCTTAAGTGATTCTTACAAAAAGAGCACACACTAAGAAGTAGACTCTATCACTAGTTCCCACTGACAGGAAGGAAGGTAGTGCAAAGAGACTTGAGTGTGGGGTGTGAGGCATGAATCCTTGCTCAAGGTGGTCTCTGAATGGACCTTTTCTTCCTCCTCCTCTTCCCCCTCTTCCTCCTCTTTTTCCTCTTCCTCCTCCTGCACCTTCAGTAAATCCCTATGGACTAATCCCTTTCCAGATAGCCCCATTCCTTGTCATCTTGAAGGTTTACCAGGCCCACATGAATTCAGCCTACCAGAGGGTGTGTTTCTTCTGCTTCCTAAAAGGAGAGGTCATTGTGGGAAGAGAGGCAGGCCAGAGGAGGGGACCCATCAGAGCTGCTTGGAAGGAGCCAGCTAAAGAAGCCAACTTAGAACACATCCAAGACCCAGTTCTTCTTGCTTAGAACTCTGGGCTCCCTGTAGCTCTTTTCCAAGTCCCAAATCCTGACATTGGGCTCTTGCACAGTTTTTACCCAGTGAGTCAGGCATGAGTCTTTCACGCCCCCCAGACAGTATCAGTATGCAAGTTAAGAGCTATCTAAAGCTTGGCCTGGAAGAAGACATCGGCAACCTCAGCTTTCCCAGCAAGGGCTCAGCCTGTTATGGAGATCCATTCTGTACTTTCTGGGAATGGTGTTAGCACCTGAAGGTTCTTCTCTGCATCCTTGGTCTTTCCAAGCTTCAAGTACATATAGTCCTTGGGAATGAGAATAATAGAAACCTGTAAATTTTCATTTGTGCATTGTAAAACACAGACACACACACACACACACACACACACACACACACACATACACTTGTGAATGAAGATTGCCTTAGTTTAACTAAGCACAGCTTGTCATTTAATAAGATTCTAGGTATTGTTGGGGGAGTGGGGGGGGAATCAAACTTTCTTATGTCCAGTTGTGGATTTTGTGGATCTGTATGGTAACAGATTTGGCTACTCAGTGGCTGACTACAATTGAAGAATTGGTACTAGTGACCAAGCCATTAGTCATTATAATGCACCCTCCACTCCTCATGCACAAAAATGCTGAATAGTGAATTATGATCCAGTCAGTTTGGCTGAAATGGAGAAGCAAAATTGAGCAGGCTGTGAGGCATTTGAATTAATTACTTGGCCATTAGAAAAACCAAAGGAGGGAGAAACACATTGTACATGGTTTGTTTCCATAACGTCACTTAAACATAATTTCAGCAACATGATCCTGTGAAAACATTCAGCAGGATGTCCGCATGCAGTTGGAGGGTGAGTTTTAGTGGCCAGGCTAAGAACCCAGTGTCCAGGCAGCTGGTGGACAGCCAGGCTGGGAGCTTGTGTGGTGGTAGCATCCGGCTCTAGTCAGCTCTGTCCCTCCCACTGCCCACCTTCTCCCCTTTCCTCTGTGGGAAGGGAAGGGCTGTACTTGGTGCCCTGGCCTCAGCTTCATTCTTTGCTTTGCTGCCTTCTCCATGGCCTGTGACTTGTGAATCCTTCTGAAAATCAAACAAGTGCTGACCTCGAGAAGCAATTAACCTACTAGATGTGTAAAATGTGGACTTTTAAACAAAAGAGAAAATTCTGCAATCCCTGCTCTTCAAGAATCACAGGTTCAAAGCCAGCCTGGGAAACTTAGGAAGACCTTGTCTTAAAATCGGAAATGAACAGAAGGTCTAAGGATGTAGCCCAGGGTTGGAGTATTCACCTAATATTCATGAAGCCCCAGGTCGGATCTCAGTGTGACCTGAGATGGTTTTGAGGGAGGAGGAAGAGGAGGAGAAAGGGGAACAGTCCCCAGAAACCAAGAACTGGGAAATCGACATACAGAAAAGGTCATTGGCTAACCCTGTGGTCTGAGTCTCAATGGGGAGGGCTCCTTTCTCAATACATACCTGACACATGACAGCATACAGGTGAAAGAAATAATGGCCAAGGAGCCAGAGATAGAAGCACAGAATAGAGCATGGCATATGAATTTTTCTATTGTAATAATTCATTACTAAAACTTGAAATTTTATATCTATCTCCCACTGCTTAAAAGTAGATAGCCCATGAACATAATTTTTTTTAATGATTTTTACTTTCGAGACTATTTCTGCATAGTGAGACTAAGCTTTATTATGTCTTGGTGGTTCCATTCAGCCCATTGATCAGCATTTCTCGTGATGCCACTTATAAAATGGGTCACTCTTTTATGGTTGCAGAATGGTTCAACAATGAACAAGGCTCCGTGCTTCCTTGTCTATTCTTGCCTTGTACCTGGTTGAATTCATCATCACGAGCTAAATAATGCACCATTGAGCATTTTCATATGTGATATTTTCTCCTTTTAAAGATTTATTTATTTATTTTATGTACAGCATTCTGCCTGCATATGTGACTGCAGGCCAGAAGAGGGCACCAGATCTCATTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTAGAAGAGCAGTCTGTGCTCTTAACCACTGAGCCATCCTCCAGCCCCCCATATGTGATATTTTCTCATGTTGGCATTAGAAATGTTAAAGTGGTTTTCTGGTGCTAACATCTCATGGGACATCTTTAAAGTCTAGTCACTTGTCAGAAGTGTTGATAAGTTTTCAGCCACTGCTTCTTATGTCCAAGAAGATCTCGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGAATCATAGTGACCCTCGGAGTCCCTCATATCCTAATGCAATATCCCTAAGCAGTGTAAGGAATGAGTTATCCTTGCCTTGTGACAAGACATGTAGGGATTGAAGCTGTCTTGGGTTCAGATTGTGACTTGTTTCCTTAGTGCCCTTAGTGGTGGCACCTGCGTACTGAAGGTCATCTTTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGAATCATAGTGACCCTCGGAGTCCCTCATATCCTAATGCAATATCCCTAAGCAGTGTAAGGAATGAGTTATCCTTGCCTTGTGACAAGACATGTAGGGATTGAAGCTGTCTTGGGTTCAGATTGTGACTTGTTTCCTTAGTGCCCTTAGTGGTGGCACCTGCGTACTGAAGGTCATCTTTTCCTGAAAACAGAAAGCTACAAATCCTGACATCTGTTTGATAGAGATGGCCGGAAAAGATAAAAGTTCATTTTATTTTAACCACTGCAGGTTTCAGGTGGGATAAATGGTTGAACGATACCATGGATTCCGTCACCTCTAGGAGTAGGCTGGTCCAGAAGGCCTGGAGATAAACGAGTACTCTGTGGGATTATGGGAAAGAAACATGATGAACTCAAAATGACCTGCAGTGGAATTTTCAATACTACGATGTTTCTTTAGCCAAGCGAACGTTATTTCTTCAGCTCTCTGATGGCATTCATGATGTGTCGTCACAATTAGCAAGGAAGATCCTCATTGTTCAGACGATCACAGTTTGGGTTCTTGAGTTATGGTCACAATTAACTTTAATGTACTTTCATAAAATAATAGAGGAGATGGTGTCTCTTCAGAAACGCTTTGCTATGAGTCCTGCTACGCAGTGGGTTTTGAAGTTTGGGAAACTTCTTTAACGAAGACTTATCAAATTGCAATAAATCTCTACAGCTTTAAATCATCATTATTCATAGTAGCATCTTCAGAAATATTTTTCTTGCAAAAAGCTACATGGTCTTATTTATATTTATTGTTCGCTTATTTTGTCTCTGTTTTCTGTATCCAATCCCAACCTCCGTGCCTTTTAG
Seq C2 exon
ATACAGCAACTTCAGCAGCAGCTCTTTCCAGTCCTCCAGACCCTCTCCTGGACCTAGTGTGTCTCCATCTTCCGCATCGTCCTTCTCATCCCCACAGGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230:ENSRNOT00000041961:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]