BtaALTA0017014-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15803018-15804010:+
Coord C1 exon
chr11:15803018-15803117
Coord A exon
chr11:15803912-15803914
Coord C2 exon
chr11:15803915-15804010
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
TTCTCTCCCTCCTCATATAGTAG
3' ss Score
6.87
Exon sequences
Seq C1 exon
GAAATACCTTCATTGGATCAAGAGAAAACCAGACTTGAGCCTGGTCAACCCCAGCTCTCTCCAGGCATTTCAACCATTCATCTGCATCCACAGTTTCCAG
Seq A exon
TAG
Seq C2 exon
TGATTGAAAAAACATCACCTCCTATGCCTGTGGAAGTAGCTCCTGAAGCTTCAACATCAAGCGCCAGCCAAGTCATTGCACCTACTCAAGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-44-33,44-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTCTCTCCAGGCATTTC
R:
AGGAGCTACTTCCACAGGCAT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development