RnoALTA0022634-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21314475-21315141:-
Coord C1 exon
chr6:21315042-21315141
Coord A exon
chr6:21314571-21314573
Coord C2 exon
chr6:21314475-21314570
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TGTCCCCCTTCCTCATGCAGTAG
3' ss Score
8.79
Exon sequences
Seq C1 exon
GAAATACCCTCACTGGATCAAGAGAAAACAAGACTTGAACCTGGGCAACCCCAGCTCTCCCCAGGGGTTTCAACTATTCATCTGCACCCACAGTTCCCAG
Seq A exon
TAG
Seq C2 exon
TGGTTGAAAAGACATCCCCTCCTGTGCCTGTGGAGGTGGCTCCTGAAGGTTCTACATCAAGTGCCAGCCAAGTGATTGCTCCTACGCAAGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-26-24,26-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=NA C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCTGCACCCACAGTTCC
R:
TCACTTGGCTGGCACTTGATG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]