HsaALTA1003129-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000049323 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr2:33262722-33263392:+
Coord C1 exon
chr2:33262722-33262821
Coord A exon
chr2:33263294-33263296
Coord C2 exon
chr2:33263297-33263392
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
TCCTCTGCTTCCTCATATAGTAG
3' ss Score
6.71
Exon sequences
Seq C1 exon
GAAATACCTTCATTGGATCAAGAGAAAACCAAACTTGAGCCTGGTCAACCCCAGCTGTCTCCAGGCATTTCCACTATTCATCTGCATCCACAGTTTCCAG
Seq A exon
TAG
Seq C2 exon
TGATTGAAAAAACATCACCTCCTGTGCCTGTTGAAGTAGCTCCTGAAGCTTCTACGTCTAGTGCCAGCCAAGTGATTGCTCCTACTCAAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000049323-48-50,48-49-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.687
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTGAGCCTGGTCAACCC
R:
ACTTCAACAGGCACAGGAGGT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains