MmuALTA0010332-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75282328-75283018:+
Coord C1 exon
chr17:75282328-75282427
Coord A exon
chr17:75282920-75282922
Coord C2 exon
chr17:75282923-75283018
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TTTCCCTCTTCCTCGTGCAGTAG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GAAATACCTTCACTGGATCAAGAGAAAACCAGACTTGAACCTGGGCAACCCCAGCTCTCCCCAGGGGTTTCAACTATTCATCTGCACCCACAGTTTCCAG
Seq A exon
TAG
Seq C2 exon
TGGTTGAAAAGACATCCCCTCCTGTGCCTGTGGAAGTAGCTCCTGAAGCTTCCACATCCAGTGCCAGCCAAGTGATTGCTCCTACGCAAGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-33-32,33-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=NA C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCACCCACAGTTTCCA
R:
CGTAGGAGCAATCACTTGGCT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types