BtaALTA0018809-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047606 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr21:71368025-71368523:+
Coord C1 exon
chr21:71368025-71368140
Coord A exon
chr21:71368372-71368418
Coord C2 exon
chr21:71368419-71368523
Length
47 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTCAACTTTGTTGTCCGTAGCCA
3' ss Score
8.76
Exon sequences
Seq C1 exon
TAACAAGCCAAACCCGAACCAGATCAGCGTCAACAACGTCAAGGCAGGTGTGGTGAACGGCGCAGGGCCGCCAGGCCAGAGCCCTGGGGCCGGCCGGGCCTGCGAGAGCTGTTACA
Seq A exon
CCACCCAGTCTTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAG
Seq C2 exon
TGTCGCCTCTGCGCGTCTTGTTGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATGGAGAGAGGCCGGGACCCAACCGCAGTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047606-15-23,15-22,15-21-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.762 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=12.5)
A:
NA
C2:
PF0032022=GATA=PD(84.2=62.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAAACCCGAACCAGATC
R:
TATGTCCAACAAGACGCGCAG
Band lengths:
141-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development