HsaALTA0005395-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105930369-105930900:+
Coord C1 exon
chr14:105930369-105930484
Coord A exon
chr14:105930753-105930799
Coord C2 exon
chr14:105930800-105930900
Length
47 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCAACTTTGTTGTCCGTAGCCA
3' ss Score
8.64
Exon sequences
Seq C1 exon
TAACAAGCCAAATCCGAACCAAATCAGCGTCAACAACGTCAAGGCCGGTGTGGTGAACGGCACGGGGGCGCCGGGCCAGAGCCCTGGGGCTGGCCGGGCCTGCGAGAGCTGTTACA
Seq A exon
CCACACAGTCTTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAG
Seq C2 exon
TGTCGTCTCTGCGCATCTTGTTGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATGGAGAGAGGCCAGGACCAAACCGCAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-22-23,22-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.995 A=NA C2=0.449
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=12.5)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAACCAAATCAGCGTCAA
R:
ATGTCCAACAAGATGCGCAGA
Band lengths:
132-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)