RnoALTA0024823-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137943197-137943762:+
Coord C1 exon
chr6:137943197-137943312
Coord A exon
chr6:137943611-137943657
Coord C2 exon
chr6:137943658-137943762
Length
47 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCAACTTTGTTGTCCGTAGCCA
3' ss Score
8.64
Exon sequences
Seq C1 exon
TAACAAGCCAAACCCAAACCAGATCAGCGTCAACAGTGTCAAGGCCAGTGTAGTGAATGGCACAGGGACACCAGGCCAGAGCCCCGGGGCCGGTCGGGCCTGCGAGAGCTGTTACA
Seq A exon
CCACACAGTCTTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAG
Seq C2 exon
TGTCGCCTCTGCGCATCTTGTTGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATGGAGAGAGGCCGGGACCAAACCGCAATAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711-14-20,14-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=12.5)
A:
NA
C2:
PF0032022=GATA=PD(84.2=62.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAAACCAGATCAGCGTC
R:
TGTCCAACAAGATGCGCAGAG
Band lengths:
133-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]