MmuALTA0011354-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:114369096-114369678:+
Coord C1 exon
chr12:114369096-114369211
Coord A exon
chr12:114369527-114369573
Coord C2 exon
chr12:114369574-114369678
Length
47 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCAACTTTGTTGTCCGTAGCCA
3' ss Score
8.64
Exon sequences
Seq C1 exon
TAACAAGCCCAACCCAAACCAGATCAGCGCCAGCAGTGTCAAGGCCACTGTAGTGAATGGCACAGGGACACCAGGCCAGAGCCCCGGGGCCGGTCGGGCCTGCGAGAGCTGTTACA
Seq A exon
CCACACAGTCTTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAG
Seq C2 exon
TGTCGCCTCTGCGCATCTTGTTGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATGGAGAGAGGCCGGGACCAAACCGCAATAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-17-17,17-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.960 A=NA C2=0.365
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=12.5)
A:
NA
C2:
PF0032022=GATA=PD(84.2=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCAACCCAAACCAGAT
R:
TGTCCAACAAGATGCGCAGAG
Band lengths:
140-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: