GgaALTA0001356-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002803 | MTA1
Description
NA
Coordinates
chr8:4057040-4058095:-
Coord C1 exon
chr8:4057980-4058095
Coord A exon
chr8:4057145-4057191
Coord C2 exon
chr8:4057040-4057144
Length
47 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
TCCACCTTTGTTATCTCTAGCCA
3' ss Score
7.63
Exon sequences
Seq C1 exon
TAACAAGCCAAACCCCAACCAGATCAATGTAAATAATGTCAAACCAGGAGTGGTAAATGGTACTGGAGTACAGGCACAGAACGCGGCAGCAGGACGGGCCTGTGAAAGCTGTTATA
Seq A exon
CCACACAGTCTTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAG
Seq C2 exon
TGTCGCCTCTGTGCATCCTGTTGGACGTACTGGAAGAAATACGGTGGCTTGAAAATGCCAACTCGGTTAGATGGAGAGAGACCAGGACCAAACCGCAATAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803-28-25,28-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.634
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=12.5)
A:
NA
C2:
PF0032022=GATA=PD(84.2=62.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAACCCCAACCAGATCAA
R:
CCAGTACGTCCAACAGGATGC
Band lengths:
143-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]