BtaALTD0005858-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:67956444-67982890:-
Coord C1 exon
chr6:67982764-67982890
Coord A exon
chr6:67982759-67982763
Coord C2 exon
chr6:67956444-67956560
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GGTATTTGTCTTTCTATTAGGGA
3' ss Score
6.22
Exon sequences
Seq C1 exon
TGACCCTCTCTGCAAACGTGAACTCCTCATTCCTGATGGCTCGCAGATCTGCCATGGAACACCACGTGTGTGCGGATGGCTGGCAAGAGACCCTGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGG
Seq A exon
GTAAG
Seq C2 exon
GGAACCATCTATGACCAAATTGATAGAGGAACAGGAGCAAGACCAACAGTGGCTTACATTACACTCCAACTGGGAGAGCCTTAATGCAACAACTTTGCAGCAACTACTGGTAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199-15-16,16-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(34.7=76.7)
A:
NA
C2:
PF154941=SRCR_2=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCAAGAGACCCTGAGTC
R:
AAGCCACTGTTGGTCTTGCTC
Band lengths:
104-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development