DreALTD0000776-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44175325-44176428:+
Coord C1 exon
chr23:44175325-44175442
Coord A exon
chr23:44175443-44175447
Coord C2 exon
chr23:44176300-44176428
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GTGTGTGTGTGTATGTGTAGTTC
3' ss Score
5.79
Exon sequences
Seq C1 exon
TGTCCCTGTCTGATGAGGGCTCGCTGCTGGTGTATAAGGCCGGCTTGGAGTATCATGTGTGTGCGGATGGATGGAGCCCAAACCACAGCAGCGTCACATGCACACAGATGGGTTTAGG
Seq A exon
GTAAG
Seq C2 exon
TTCTCCTCTCTCCACAGATGCAATGTTGGATGTATCTCCTGTTGTGAGACGCAAACGCTGGTTACATGTGGACCCAGACTGGAGTCCTGAGAACATGCTTCCTCTACAGGGCCTGCTGGAAAAACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281-20-17,21-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACATGCACACAGATGGGT
R:
CTGGGTCCACATGTAACCAGC
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]