MmuALTD1002019-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72319522-72329741:-
Coord C1 exon
chr5:72329612-72329741
Coord A exon
chr5:72329607-72329611
Coord C2 exon
chr5:72319522-72319635
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CAGCATTTCCTTTCTATCAGAGA
3' ss Score
6.01
Exon sequences
Seq C1 exon
TGACCCTCTCTAAAAATGGGAACTCCTCCTCATTGCTGACTGTTCACAAATCTGCAAAGGAACACCACGTGTGTGCTGACGGCTGGCGGGAGACGTTGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGG
Seq A exon
GTAAG
Seq C2 exon
AGAACCGTCTGTGACCAAGCTGATCCCAGGACAGGAAGGCCAGCAGTGGCTGAGGTTGTACCCCAACTGGGAGAATCTCAATGGGAGCACCTTGCAGGAGCTGCTGGTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-28-24,29-24-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(37.1=81.8)
A:
NA
C2:
PF154941=SRCR_2=FE(39.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAAAGGAACACCACGTG
R:
GATCAGCTTGGTCACAGACGG
Band lengths:
105-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types