GgaALTD0005541-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000014144 | F1NZW6_CHICK
Description
NA
Coordinates
chr4:68629724-68636529:+
Coord C1 exon
chr4:68629724-68629804
Coord A exon
chr4:68629805-68629809
Coord C2 exon
chr4:68636407-68636529
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
ATGTCTTTCATTCGTTTCAGAGG
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTCAGCTGCTGATAATCACGTTTGTGCTGATGAGTGGCAAGAAAATTTGAGCCAACTGGCCTGCAATCAAATGGGTTTAGG
Seq A exon
GTAAG
Seq C2 exon
AGGACCATCTAAAACAATGATTGTATTAGAAGATGGAGAAATGCAGCAACAAAAGTGGCTGCATCTGCACTCAGACTGGAAGAGTAAGAATGCTTCCACTTTACATGCACTTCTAGTGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144-16-19,17-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(36.6=84.1)
A:
NA
C2:
PF154941=SRCR_2=FE(40.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGCAATCAAATGGGTT
R:
GCAGATGCAGCCACTTTTGTT
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]