RnoALTD0007559-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38443932-38454336:+
Coord C1 exon
chr14:38443932-38444061
Coord A exon
chr14:38444062-38444066
Coord C2 exon
chr14:38454223-38454336
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CAGCATTTCTCTTATATTAGAGA
3' ss Score
3.25
Exon sequences
Seq C1 exon
TGACCCTCTCTAAAAATGGGAACTCCTCCTCATTCCTGACTGTTCACAGATCTGCAAGAGATCACCACGTGTGTGCTGATGGCTGGCAGGAGACGTTGAGTCAGCTGGCCTGCAGGCAGATGGGTTTAGG
Seq A exon
GTAAG
Seq C2 exon
AGAACCATCTGTGACTGAACTGGTCCAAGGGCAGGAAGGCCAGCAGTGGCTGAGGTTGCACTCCAGCTGGGAGAATCTCAATGGGAGCACCCTGCAGGAGCTGCTGGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-28-19,29-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(37.1=81.8)
A:
NA
C2:
PF154941=SRCR_2=FE(39.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGATCACCACGTGTGTGC
R:
CCCTTGGACCAGTTCAGTCAC
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]