BtaALTD0008127-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007148 | F2
Description
Bos taurus coagulation factor II (thrombin) (F2), mRNA. [Source:RefSeq mRNA;Acc:NM_173877]
Coordinates
chr15:77533656-77535317:+
Coord C1 exon
chr15:77533656-77533792
Coord A exon
NA
Coord C2 exon
chr15:77535003-77535317
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TCTCTCTCCTCACCCACCAGGCC
3' ss Score
9.56
Exon sequences
Seq C1 exon
AATCAACTCTACCACCCACCCGGGGGCTGACCTGCGGGAGAATTTTTGCCGCAACCCGGATGGCAGCATTACTGGGCCCTGGTGCTACACCACATCCCCGACTCTGCGGAGAGAAGAGTGCAGCGTCCCCGTGTGCG
Seq A exon
NA
Seq C2 exon
GCCAGGACCGAGTCACAGTGGAGGTGATCCCCCGGTCAGGAGGCTCCACTACCAGTCAGTCGCCTCTACTGGAAACATGCGTCCCGGACCGCGGCCGGGAGTACCGGGGGCGGCTGGCGGTGACCACAAGCGGGTCCCGCTGCCTTGCCTGGAGCAGCGAGCAGGCCAAGGCCCTGAGCAAGGACCAGGACTTCAACCCGGCCGTGCCCCTGGCGGAGAACTTCTGCCGCAACCCAGACGGGGACGAGGAGGGCGCCTGGTGCTACGTGGCCGACCAGCCTGGCGACTTTGAGTATTGTGACCTGAACTACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007148-6-11,7-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.264
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NA
C2:
PF0005113=Kringle=WD(100=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATTTTTGCCGCAACCC
R:
TCCAGTAGAGGCGACTGACTG
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development