RnoALTD0010855-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016325 | F2
Description
coagulation factor II [Source:RGD Symbol;Acc:61996]
Coordinates
chr3:80536475-80539385:-
Coord C1 exon
chr3:80539252-80539385
Coord A exon
chr3:80539249-80539251
Coord C2 exon
chr3:80536475-80536789
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TCTGTATCCTTCTTCACCAGGTC
3' ss Score
9.48
Exon sequences
Seq C1 exon
CATCAACTCCACCACCCATCCTGGGGCTGACCTGAAGGAGAACTTCTGCCGAAATCCAGACAGCAGCACCTCAGGGCCCTGGTGCTACACCACAGACCCTACTGTGCGCAGAGAGGAATGCAGTATCCCTGTCT
Seq A exon
GTG
Seq C2 exon
GTCAGGAGGGCCGTACCACTGTGAAAATGACTCCTCGCTCAAGAGGTTCCAAGGAGAATCTGTCGCCTCCATTGGGAGAGTGCCTCCTCGAGCGTGGCCGGCTGTACCAGGGGAACTTAGCTGTGACAACACTTGGGTCCCCCTGCCTGGCCTGGGACAGTTTGCCAACCAAGACCCTGAGCAAGTACCAGAACTTCGACCCTGAGGTGAAACTCGTGCAAAACTTCTGCCGCAATCCAGACCGGGATGAGGAGGGCGCGTGGTGCTTTGTTGCGCAGCAGCCTGGTTTTGAATACTGCAGCCTCAACTACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016325-5-9,6-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NA
C2:
PF0005113=Kringle=WD(100=73.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAGAGAGGAATGCAGTAT
R:
CCCAATGGAGGCGACAGATTC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]