GgaALTD1009247-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008332 | F2
Description
prothrombin precursor [Source:RefSeq peptide;Acc:NP_989936]
Coordinates
chr5:22741542-22742300:-
Coord C1 exon
chr5:22742222-22742300
Coord A exon
chr5:22742215-22742221
Coord C2 exon
chr5:22741542-22741838
Length
7 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
ACAACTTTCTGCCTTTCCAGGTC
3' ss Score
11.25
Exon sequences
Seq C1 exon
GAACCCAGACAACAACTCAGAAGGTCCATGGTGCTACACACGAGACCCAACAGTGGAACGGGAAGAGTGCCCCATTCCA
Seq A exon
GTATGTG
Seq C2 exon
GTCAAGAAAGGACAACAGTTGAGTTCACTCCACGGGTCAAACCATCAACCACAGGGCAGCCTTGTGAATCAGAGAAAGGAATGCTTTATACAGGGACGCTTTCAGTCACTGTATCTGGGGCTAGGTGCCTGCCATGGGCCTCAGAGAAGGCCAAAGCATTGCTCCAAGACAAAACCATTAACCCAGAAGTGAAGCTGCTGGAGAATTACTGTCGGAACCCTGATGCAGATGATGAGGGTGTCTGGTGTGTAATAGATGAACCACCATACTTTGAATACTGTGACCTGCATTACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008332-5-10,6-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(55.8=95.6)
A:
NA
C2:
PF0005113=Kringle=WD(100=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACACACGAGACCCAACAG
R:
TGGTTGATGGTTTGACCCGTG
Band lengths:
98-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]