MmuALTD0005131-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000027249 | F2
Description
coagulation factor II [Source:MGI Symbol;Acc:MGI:88380]
Coordinates
chr2:91630509-91633112:-
Coord C1 exon
chr2:91632979-91633112
Coord A exon
chr2:91632976-91632978
Coord C2 exon
chr2:91630509-91630826
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TCTGTATCCTTCTTCACCAGGCC
3' ss Score
8.64
Exon sequences
Seq C1 exon
AATCAACTCCACCACCCATCCTGGGGCAGACCTGAAGGAGAACTTCTGCCGCAATCCAGACAGCAGTACCACGGGACCCTGGTGCTACACCACAGATCCTACTGTGCGCAGAGAGGAATGCAGTGTCCCTGTCT
Seq A exon
GTG
Seq C2 exon
GCCAGGAGGGCCGTACCACTGTGGTGATGACTCCTCGCTCTGGAGGTTCCAAGGACAATCTGTCACCTCCACTGGGACAGTGCCTCACTGAGCGTGGCCGACTATACCAGGGGAATTTGGCTGTGACAACACTTGGGTCCCCCTGCCTGCCCTGGAACAGCTTACCAGCCAAGACCCTGAGCAAGTACCAAGACTTCGACCCCGAGGTGAAACTCGTGGAAAACTTCTGCCGCAACCCAGACTGGGATGAGGAGGGCGCATGGTGCTATGTTGCGGGGCAGCCTGGCGACTTTGAATACTGCAACCTCAACTACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027249-11-10,12-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.131
Domain overlap (PFAM):
C1:
PF0005113=Kringle=FE(57.0=100)
A:
NA
C2:
PF0005113=Kringle=PD(0.1=0.0),PF0005113=Kringle=WD(100=73.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAGGAATGCAGTGTCC
R:
GTCCCAGTGGAGGTGACAGAT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types