DreALTD0007707-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000036041 | f2
Description
coagulation factor II (thrombin) [Source:ZFIN;Acc:ZDB-GENE-030131-4606]
Coordinates
chr7:38481387-38482155:+
Coord C1 exon
chr7:38481387-38481514
Coord A exon
chr7:38481515-38481517
Coord C2 exon
chr7:38482124-38482155
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGAG
5' ss Score
-1.25
3' ss Seq
CTCTCTCTCCTCCTCCTCAGGTG
3' ss Score
12.19
Exon sequences
Seq C1 exon
CGAATTTAATGTGACACAGCTGAAGCTACCGGAGAACTTCTGCAGGAACCCAGATAAGCACAAAGATGGCCCTTGGTGTTTTACCAGAGACCCGACTGTCAGGAGGGAGACCTGCAATGTGCCAAAAT
Seq A exon
GTG
Seq C2 exon
GTGAGGCTGTTGTTCCTCCTCCAAAAGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036041-7-7,8-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.101
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(55.8=95.6)
A:
NA
C2:
PF0005113=Kringle=WD(100=77.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAAGATGGCCCTTGGTGT
R:
TTGGAGGAGGAACAACAGCCT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]