BtaALTD0023494-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010241 | UNC5D
Description
Bos taurus unc-5 homolog D (C. elegans) (UNC5D), mRNA. [Source:RefSeq mRNA;Acc:NM_001192518]
Coordinates
chr27:30993270-30998245:+
Coord C1 exon
chr27:30993270-30993416
Coord A exon
chr27:30993417-30993455
Coord C2 exon
chr27:30997868-30998245
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
GATCCATCTTCTCTGACCAGGTA
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCATCGAGAATGCCAGTGACATCGCTTTGTACTCAGGCTTGGGTGCCGCGGTTGTGGCTGTTGCAGTCCTGGTCATCGGCATCACCCTGTACAGACGCAGCCAGAGTGACTATGGTGTGGACGTCATCGACTCTTCTGCATTGACAG
Seq A exon
GTGGCTTCCAGACCTTCAACTTCAAAACAGTCCGTCAAG
Seq C2 exon
GTAACTCCCTGCTCTTGAACCCCTCCATGCAACCGGACCTGACAGTGAGCCGAACGTACAGTGGGCCCATCTGTCTACAGGACCCCCTGGACAAGGAGCTCATGACGGAGTCCTCACTCTTTAACCCTTTGTCGGACATCAAAGTCAAAGTGCAGAGCTCGTTCATGGTCTCCCTGGGAGTGTCCGAGCGAGCCGAGTACCACGGCAAGAATCATTCCGGGACTTTCCCCCACGGAAACAACCGCAGCTTCACGACAGTGCATGCCAGAAATAAGACGCCCTACATCCAGAACTTGTCATCACTCCCTACACGGACCGAGCTGAGGACCACGGGTGTCTTTGGCCATTTGGGAGGACGCTTAGTAATGCCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010241-13-23,14-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(20.6=16.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGCAGCCAGAGTGACTAT
R:
GTACGTTCGGCTCACTGTCAG
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development