MmuALTD0015283-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 homolog D (C. elegans) [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:29830089-29834878:-
Coord C1 exon
chr8:29834732-29834878
Coord A exon
chr8:29834693-29834731
Coord C2 exon
chr8:29830089-29830466
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TCATCTTTTTTTCTTACTAGGAA
3' ss Score
10.69
Exon sequences
Seq C1 exon
GCATTGAGAATGCCAGCGACATTGCTTTGTACTCCGGCTTGGGTGCAGCCGTGGTAGCTGTTGCGGTCCTGGTCATTGGTGTCACCCTCTACAGACGGAGCCACAGTGACTACGGAGTGGATGTCATTGACTCTTCTGCATTGACAG
Seq A exon
GTGGCTTCCAGACCTTCAACTTCAAAACAGTTCGTCAAG
Seq C2 exon
GAAATTCTCTACTACTGAATCCTGCCATGCAGCCAGATCTGACTGTGAGCCGGACATACAGCGGGCCCATCTGTCTGCAGGATCCGCTCGACAAGGAGCTCATGACAGAGTCCTCACTCTTCAATCCTTTATCTGACATCAAAGTCAAAGTCCAGAGCTCATTTATGGTTTCCCTGGGAGTGTCTGAGAGAGCGGAGTACCATGGCAAGAATCACTCGGGGACTTTCCCCCATGGAAACAACCGCGGATTCAGTACAATACATCCCAGAAACAAAACGCCGTACATCCAAAATCTGTCATCACTGCCGACAAGGACAGAGCTGAGGACAACTGGTGTCTTTGGCCATTTAGGGGGACGCTTAGTAATGCCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626-9-11,10-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(20.6=16.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCACCCTCTACAGACGGA
R:
ATGTCCGGCTCACAGTCAGAT
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: