HsaALTD0007044-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000156687 | UNC5D
Description
unc-5 homolog D (C. elegans) [Source:HGNC Symbol;Acc:18634]
Coordinates
chr8:35579728-35584047:+
Coord C1 exon
chr8:35579728-35579874
Coord A exon
chr8:35579875-35579913
Coord C2 exon
chr8:35583670-35584047
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
GATCAATTTTCTTTTACCAGGTA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GCATTGAGAATGCCAGCGACATTGCTTTGTACTCGGGCTTGGGTGCTGCCGTCGTGGCCGTTGCAGTCCTGGTCATTGGTGTCACCCTTTACAGACGGAGCCAGAGTGACTATGGCGTGGACGTCATTGACTCTTCTGCATTGACAG
Seq A exon
GTGGCTTCCAGACCTTCAACTTCAAAACAGTCCGTCAAG
Seq C2 exon
GTAACTCCCTGCTCCTGAATTCTGCCATGCAGCCAGATCTGACAGTGAGCCGGACATACAGCGGACCCATCTGTCTGCAGGACCCTCTGGACAAGGAGCTCATGACAGAGTCCTCACTCTTTAACCCTTTGTCGGACATCAAAGTGAAAGTCCAGAGCTCGTTCATGGTTTCCCTGGGAGTGTCTGAGAGAGCTGAGTACCACGGCAAGAATCATTCCAGGACTTTTCCCCATGGAAACAACCACAGCTTTAGTACAATGCATCCCAGAAATAAAATGCCCTACATCCAAAATCTGTCATCACTCCCCACAAGGACAGAACTGAGGACAACTGGTGTCTTTGGCCATTTAGGGGGGCGCTTAGTAATGCCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687-11-13,12-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(20.6=16.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGTCATTGGTGTCACC
R:
CTGTCAGATCTGGCTGCATGG
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)