GgaALTD0000497-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000001608 | UNC5D
Description
NA
Coordinates
chr22:1902681-1904697:+
Coord C1 exon
chr22:1902681-1902785
Coord A exon
chr22:1902786-1902866
Coord C2 exon
chr22:1904320-1904697
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
GATCCACTTCATTTCACCAGGTA
3' ss Score
7.59
Exon sequences
Seq C1 exon
ATATAGAGACAGCCAGTGACATTGCCCTGTACTCCGGCCTGGGAGCAGCAGTCATTGCTGTAGCTGTGCTGGTGGTTGGTGTTACCCTTTACAGACGGAGTCAGA
Seq A exon
GTGAGTACGGCGTGGATGTGATTGATTCATCTGCACTGACAGGAGGCTTCCAGACATTTAATTTTAAAACAGTCAGACAAG
Seq C2 exon
GTAACTCCCTGCTTTTGAATTCATCCATGCAGCCTGACTTGACAGTGAGCAGAACGTACAGTGGACCAATCTGCCTGCAGGATCCAATGGACAAGGAGCTAATGACAGAGTCTTCGCTGTTCAACCCGCTGTCAGACATCAAAGTCAAAGTTCAGAGTTCGTTCATGGTTTCTCTGGGGGTGACAGAGAGGGCTGAATATCACGGAAAGGCACATTCTGGAACTTTTCCTCATGGGAATGCTAGAGGTTTTGGAACAATACAGGCTAGAAACAAGGCTGCATACATTCAGAACCTGTCTTCTATTTCAACAAGAAATGAACTGAAGACAACTGCCATCTTTGGGCACCTGGGTGGTCGTTTAGTGGTTCCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608-9-7,10-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(20.6=16.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATTGCCCTGTACTCCG
R:
GATCCTGCAGGCAGATTGGTC
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]