RnoALTD0032931-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011858 | Unc5d
Description
unc-5 netrin receptor D [Source:RGD Symbol;Acc:1309245]
Coordinates
chr16:67522401-67527374:+
Coord C1 exon
chr16:67522401-67522547
Coord A exon
chr16:67522548-67522586
Coord C2 exon
chr16:67526997-67527374
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
GATCCTGTTTTTCTTACCAGGAA
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCATTGAGAATGCCAGCGACATTGCTTTGTACTCGGGCTTGGGTGCAGCCGTTGTAGCCGTTGCGGTCCTGGTCATTGGTGTCACCCTCTACAGACGGAGCCATAGTGACTACGGAGTGGACGTCATTGACTCTTCTGCATTGACAG
Seq A exon
GTGGCTTCCAGACCTTCAACTTCAAAACAGTTCGTCAAG
Seq C2 exon
GAAATTCTCTCCTCCTGAATCCTGCCATGCATCCAGATCTGACTGTGAGCCGGACGTACAGCGGGCCCATCTGTCTGCAGGATCCACTGGACAAGGAGCTCATGACAGAGTCCTCACTCTTCAACCCTCTCTCTGACATCAAAGTCAAAGTCCAGAGCTCATTCATGGTTTCCCTGGGAGTGTCTGAGAGAGCCGAGTACCATGGCAAGAATCACTCCGGGACCTTCCCCCATGGAAACAACCGTGGATTTAGTACCATACATCCCAGAAACAAGACTCCGTACATCCAAAATCTGTCGTCACTGCCCACAAGGACGGAGCTGAGGACAACTGGTGTCTTTGGACACTTAGGGGGGCGCTTAGTAATGCCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011858-15-13,16-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.239
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(20.6=16.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCATTGGTGTCACCCTCT
R:
CAGATCTGGATGCATGGCAGG
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]