BtaEX0000164 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKN3]
Coordinates
chr13:11167773-11171485:+
Coord C1 exon
chr13:11167773-11168705
Coord A exon
chr13:11170556-11170626
Coord C2 exon
chr13:11171392-11171485
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTCTCTTTTTAGTTG
3' ss Score
11.34
5' ss Seq
AAAGTATGA
5' ss Score
3.87
Exon sequences
Seq C1 exon
ATGTGACTAAGCTGAGAAGTAACAGTGAGATGGCTTCCCAGCAACTTTCTGAAGTGGAAAGTCAATTCAATAAGCTAAAAATCAAGCTGCATCAGACGAGAGATGATCTCAGAGAAAAGACTTTGATGTTAGAATGTGTCCAGAGAGACCCAAGCCAAGCAGAGTGTCAAAAGCAGGAAATTGAACACAAGTATCAGAACAAACAAGGCAAAGTGAATGAATACCTTAAAAAGCAGGAATCCTTAGAGGAGAGATTATCTCAACTCCAGAGTGAAAACATGTTGCTCCGACAGCAGGTGGGTGATGCACAAAATGGAGCCGACAGTAAAGAGAAGACAGTCATTGGCATCCAAGACGAGATTCAGCAGATCATGAAGAAAGTCCATGCTGAAATTGAGGAACAAGGTTTGATGGTGATGGGAAAAGACAAGGAGTTAGTCAACGAGTGGAATCCTTTAGAAGAGAGACCTTGTCAGTATGAAGATGAGAGAGCAGGAGAA
Seq A exon
TTGCAAGAAGCACAGGATCAACATGTAGAGGCCATGAGATGTGCTGAAAAAACACAGGATCACATCCAAAA
Seq C2 exon
ACTTGAAATTGAAAATGCCGAGTTACAAACTACAGTCAAAAAGCAAGTGGGCAAAATTGAACACCTTCAGAAAAACCTGTTAAGTACAAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004354_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
83%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCATGCTGAAATTGAGGAACA
R:
TGCCCACTTGCTTTTTGACTG
Band lengths:
174-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development