BtaEX0000529 @ bosTau6
Exon Skipping
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28250597-28251529:-
Coord C1 exon
chr25:28251452-28251529
Coord A exon
chr25:28251016-28251068
Coord C2 exon
chr25:28250597-28250659
Length
53 bp
Sequences
Splice sites
3' ss Seq
AACCCCACCCCACTCTGCAGCGG
3' ss Score
4.96
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCATGCGGTGGCTCTGACCAGAGACTCTGAAAGGCTGCTGGAGGTGCAGAAGCGGATCAACGTCCTGCCCCTGGGGAG
Seq A exon
CGGGGCCATCGCAGGCAACCCCCTGGGTGTGGACCGGGAACTGCTCCGAGCAG
Seq C2 exon
AACTGGACTTTGGGGCCATCACTCTCAACAGCATGGATGCCACCAGTGAGCGAGACTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(8.8=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGGTGGCTCTGACC
R:
CAAAGTCTCGCTCACTGGTGG
Band lengths:
137-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development