MmuEX0006431 @ mm9
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130489833-130492044:-
Coord C1 exon
chr5:130491967-130492044
Coord A exon
chr5:130490549-130490601
Coord C2 exon
chr5:130489833-130489895
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGAACCCCGTCTCTCTACAGTGG
3' ss Score
8.52
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCACGCTGTTGCGCTGACACGAGATTCAGAGAGACTCTTGGAGGTGCAGAAGCGGATCAATGTCTTGCCACTGGGGAG
Seq A exon
TGGGGCCATTGCAGGCAACCCTCTGGGTGTGGACCGGGAGCTACTCCGTGCAG
Seq C2 exon
AACTGAACTTTGGGGCCATCACTCTCAACAGCATGGATGCCACCAGTGAGAGAGACTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-'13-23,'13-21,14-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.3=100)
A:
PF0020615=Lyase_1=PD(0.1=0.0),PF0020615=Lyase_1=FE(16.8=100)
C2:
PF0020615=Lyase_1=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCGCTGACACGAGATTC
R:
CAAAGTCTCTCTCACTGGTGGC
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: