DreEX6085294 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31223117-31223708:+
Coord C1 exon
chr21:31223117-31223194
Coord A exon
chr21:31223473-31223525
Coord C2 exon
chr21:31223646-31223708
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATATTATATTTGCTTTTCAGTGG
3' ss Score
7.88
5' ss Seq
AAGGTTGAC
5' ss Score
1.86
Exon sequences
Seq C1 exon
TCATGTAGTGGCAATAAGCAGGGATGTTGAGCGGCTGGAGGACATCAGGAAACGTGTTAATGTGATGCCACTAGGAAG
Seq A exon
TGGAGCCATTGCTGGGAATCCCTTCGACATTGACAGAGAACTACTTCGCCAAG
Seq C2 exon
AACTCAGTTTTGACAGTATCAGTATTAACAGCATGGATGCTACTGGACAGAGGGATTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(11.4=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=PD(8.7=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATAAGCAGGGATGTTGAGC
R:
ATCCCTCTGTCCAGTAGCATCC
Band lengths:
124-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]