RnoEX0012264 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30173792-30175892:+
Coord C1 exon
chr12:30173792-30173869
Coord A exon
chr12:30174981-30175033
Coord C2 exon
chr12:30175830-30175892
Length
53 bp
Sequences
Splice sites
3' ss Seq
GTGAACCCTTGTCTCTACAGTGG
3' ss Score
8.2
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCACGCCGTTGCGCTGACACGAGATTTAGAGAGACTGAAGGAGGTGCAGAAGCGGATCAATGTCCTGCCACTGGGCAG
Seq A exon
TGGGGCCATTGCAGGCAACCCTCTGGGTGTGGACCGGGAGTTCCTCTGTGCAG
Seq C2 exon
AACTGAACTTTGGAGCCATTACGCTCAACAGTATGGATGCCACCAGCGAGAGAGACTTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'9-8,'9-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(8.8=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGCGCTGACACGAGATTT
R:
ACGAAGTCTCTCTCGCTGGTG
Band lengths:
133-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]