GgaEX1017733 @ galGal4
Exon Skipping
Gene
ENSGALG00000002576 | CRYD2
Description
argininosuccinate lyase [Source:RefSeq peptide;Acc:NP_001025885]
Coordinates
chr19:4935490-4936550:-
Coord C1 exon
chr19:4936473-4936550
Coord A exon
chr19:4935983-4936035
Coord C2 exon
chr19:4935490-4935552
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTTTCCCTGGCAGTGG
3' ss Score
9.54
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
Exon sequences
Seq C1 exon
CCATGCTGTTGCACTGATCCGTGATTCCGAGCGCCTGGGTGAGGTGAAGAAAAGGATGAGCGTCCTGCCTCTGGGAAG
Seq A exon
TGGTGCTCTGGCTGGCAACCCACTGGAAATTGATAGAGAACTTCTTCGTAGCG
Seq C2 exon
AACTGGACTTTGCTTCCATCAGCCTGAACAGCATGGATGCCATCAGTGAGAGAGACTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002576-'5-11,'5-10,6-11
Average complexity
S
Mappability confidence:
100%=75=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(8.8=100)
A:
PF0020615=Lyase_1=FE(6.1=100)
C2:
PF0020615=Lyase_1=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTGCACTGATCCGTGAT
R:
AAGTCTCTCTCACTGATGGCA
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]