BtaEX0000772 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44339818-44347706:+
Coord C1 exon
chr22:44339818-44340010
Coord A exon
chr22:44345880-44346052
Coord C2 exon
chr22:44347566-44347706
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTCTCTTCTTCCAGATT
3' ss Score
11.05
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ACCAGAGTTAGAAGAGGAACGAAATGCTCTTATTCTTCAGTCTGCAGCTAATAAGAAACAGCTGAAAGATATAGAGAAAAAAATTTTAGAAACATTATCATCTTCAGAAGGAAACATTTTAGAAGATGAAAGTGCGATTAAAATCTTGGACTCTGCTAAATTGATGTCCAATGAGATAACCAAGAAACAACAG
Seq A exon
ATTGCAGAAAAAACAGAACTCAAAATAGCAGAGTCTCGAGAAGGTTATAGACCTATTGCTAAACATTCATCAGTGTTATTCTTTAGCATTGCAGACCTGGCTAACATCGATCCCATGTACCAGTACTCTCTCATCTGGTTTGTGAACCTTTATATCAACTCTATTCATGACAG
Seq C2 exon
TAACAAATCCAAAATTTTGGAAAAGCGCCTAAGATATTTAAATGACCACTTTACATACAACTTATATTGTAATATATGCCGGTCACTGTTCGAGAAGGACAAGCTATTGTTTTCCTTTTTATTGTGTGCCAACCTCCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'62-64,'62-62,63-64
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(26.0=92.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGCAGCTAATAAGAAACAGCT
R:
TCTCGAACAGTGACCGGCATA
Band lengths:
250-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development