RnoEX6054481 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2501044-2505545:+
Coord C1 exon
chr16:2501044-2501236
Coord A exon
chr16:2503801-2503973
Coord C2 exon
chr16:2505405-2505545
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTCTCTGCTGCCAGGTT
3' ss Score
8.27
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACCAGAGTTAGAGGAGGAGCGAAATGCTCTCATTCTTCAGTCCGCAGCTAACAAGAAGCAGCTCAAAGACATCGAGACAAGGATTTTAGAAACACTGTCATGTTCTGAAGGGAACATTCTGGAAGATGAAAGTGCGATAAAAGTCTTAGACTCTGCCAAAATGATGTCTAATGAGATCACGAAGAAACAGCAG
Seq A exon
GTTGCAGAAAAAACAGAGCTCAAAATAGCAGAGTCTCGAGAAGGCTACAGACCCATCGCCAAACACTCGTCAGTGTTATTCTTCAGCATTGCAGACCTGGCCAACATCGATCCTATGTACCAGTACTCCCTCACCTGGTTTGTGAACCTGTACATCAACTCCATTCACGACAG
Seq C2 exon
CAACAGATCCAAAATTTTGGAAAAACGCCTGCGCTATCTAAATGACCACTTCACATACAACTTATATTGTAACATATGCCGATCTCTGTTCGAGAAAGACAAGCTGCTGTTCTCCTTTTTATTATGTGCTAATCTTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'64-70,'64-69,65-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(26.0=92.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCAAAGACATCGAGACA
R:
ACAGCAGCTTGTCTTTCTCGA
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]