GgaEX6010302 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8650426-8652306:-
Coord C1 exon
chr12:8652114-8652306
Coord A exon
chr12:8651043-8651215
Coord C2 exon
chr12:8650426-8650566
Length
173 bp
Sequences
Splice sites
3' ss Seq
AAACTGCTATTGATGTTCAGATT
3' ss Score
3.93
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ACCAGAATTGGAAGATGAAAGAAATGCTCTCATCCTTCAGTCTGCAGCCAATAAAAAAAATCTAAAAGAAATTGAGAAGAAAATTCTAGAAACCCTACAGTCATCTGAAGGGAATATTCTGGAAGATGAGACAGCAATCACAATCTTGGATTCTGCTAAAATAATGGCTAATGAAATCACAAAAAAACAACAG
Seq A exon
ATTGCAGAGAAAACAGAACTGAAAATAGCTCAGTCTCGAGAAGGCTATCGACCTATTGCAAAGCATTCCTCCGTGCTGTTCTTCAGCATTGCAGACTTGGCAAACATTGACCCCATGTACCAGTACTCCCTTAGCTGGTTTGTTAATCTCTTCATCAACTCTATTCATGACAG
Seq C2 exon
TAACAAATCAAAAGTTTTGGAGAAGCGACTTCGATATCTGACTGACCACTTCACATACAACTTGTTCTGCAATGTGTGCCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTTTCCTTTTTGCTATGCTGTAATCTTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'67-73,'67-72,68-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(26.0=92.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAGTCTGCAGCCAATA
R:
CTTTTCAAACAGTGAGCGGCA
Band lengths:
258-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]