DreEX6079846 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19591902-19592576:-
Coord C1 exon
chr23:19592384-19592576
Coord A exon
chr23:19592134-19592306
Coord C2 exon
chr23:19591902-19592042
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTTGTGAATTTATTATTTAGATC
3' ss Score
6.29
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GCCCGAATTAGAGGAGGAGAGAAATGCCCTGATCCTGCAGTCTGCAGCCAATAAGAAGCAGCTTAAGGAGATTGAGGACCAAATCCTGGAGACTCTGCAGTCCTCAGAGGGGAACATCCTGGAAGATGAGAGTGCCATCCAGATCCTGGACGCTGCAAAGCTCATGTCTAATGAGATTACCAAGAAACAGCAG
Seq A exon
ATCGCAGAGAAGACTGAGATTGAAATAGCCGAGTCGAGGGAGGGCTACAGAGCCATCGCCAAACACTCCTCCATCCTCTTCTTTACTATCGCAGACCTGGCCAACATCGACCCCATGTATCAATACTCTCTCAACTGGTTTGTCAACCTCTACGTCAACTCCATTCTTGACAG
Seq C2 exon
CAACAAATCAAAGAATCTAGAGAAAAGACTCCGATACCTGATTGATTATTTCACCTATAACCTCTACTGCAACGTGTGCCGTTCGCTCTTCGAGAAGGACAAACTCCTCTTCTCGTTCCTGCTCTGTTCTAACCTACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'62-62,'62-61,63-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(26.0=92.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGCAGTCCTCAGAGGG
R:
GCAGTAGGTTAGAACAGAGCAGG
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]