MmuEX6040089 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26856453-26861823:+
Coord C1 exon
chr14:26856453-26856645
Coord A exon
chr14:26859175-26859347
Coord C2 exon
chr14:26861683-26861823
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTCTCCTCTGCCAGGTT
3' ss Score
8.87
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACCAGAATTAGAGGAGGAGCGAAATGCCCTCATTCTTCAGTCTGCAGCTAACAAGAAGCAGCTCAAAGATATAGAGACAAAGATTTTAGAAACATTATCGTCTTCAGAAGGGAACATTTTGGAAGATGAAAGTGCAATAAAAGTCTTAGACTCTGCCAAAATTATGTCTAATGAGATCACGAAGAAACAGCAG
Seq A exon
GTTGCAGAAAAAACAGAGCTCAAAATAGCAGAGTCGCGAGAAGGATACAGGCCCATCGCCAAACATTCCTCAGTGCTATTCTTTAGCATTGCAGACCTGGCCAACATTGATCCCATGTACCAGTACTCTCTCACCTGGTTTGTGAACCTTTACATCAACTCCATTCATGACAG
Seq C2 exon
CAACAGATCCAAAATCTTGGAAAAGCGCCTGCGCTATTTAAATGACCACTTCACATACAACTTATATTGCAACATATGCCGATCTCTGTTCGAGAAAGACAAGTTGTTGTTCTCCTTTTTGTTATGTGCTAATCTTCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'58-62,'58-60,60-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(26.0=92.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTAACAAGAAGCAGCTC
R:
TCGAACAGAGATCGGCATATGT
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types