BtaEX0000774 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44237768-44240223:+
Coord C1 exon
chr22:44237768-44237893
Coord A exon
chr22:44239332-44239466
Coord C2 exon
chr22:44240030-44240223
Length
135 bp
Sequences
Splice sites
3' ss Seq
TACATTGTTTTCTTTTAAAGCTC
3' ss Score
9.45
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAATCCAAACGCCGGATGAGTTACTTTTTAGATGTATTTCTATTTCCTCCAGAAGACTTAGCTTTAAATTCAGCTGTCCTTATGTGGCCTTGGAAAATTAATCCCATCTTTGATGAAAATGATGAG
Seq A exon
CTCATTGAGAATGCTAAACATAGAAAAGAAAATGAACTAATAGCAAAGAGAGAGAAACTGATTTTGGAAGTAGAAAAGGAATCACGGCGCATGGAAGAGTTTGCAGAATTTGCAGAATTGGACCGCATGCAACAG
Seq C2 exon
TATGTGACAGATGTAAGACAACTACAAAAACGTATTCAGGAATCTGAAGAAGCAGTTCAGTTTATTAATAAAGAAGAGGAACTTTTCAAATGGGAACTGACAAAATATCCCGAACTGGATAAATTAAAAGTTAACATTGAGCCCTATCAGAAGTTTTTTAATTTAGTTTTGAAGTGGCAACGAACAGAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(6.7=43.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGTCCTTATGTGGCCT
R:
CGTTTTTCTGTTCGTTGCCACT
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development