MmuEX6040123 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26722088-26724048:+
Coord C1 exon
chr14:26722088-26722213
Coord A exon
chr14:26723497-26723631
Coord C2 exon
chr14:26723855-26724048
Length
135 bp
Sequences
Splice sites
3' ss Seq
TAAATTATTTTTTTAAAAAGCTC
3' ss Score
4.26
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GAATCTAAACGCCAAATGAGTTACTTTTTAGATGCTCTTCTAATGTCTCAAGAAGACTTAAATTTAAATGCAACTGTCCTCTTGTGGCCTACTAAAATTACCCCTGTCTTTGATGAGAATGATGAA
Seq A exon
CTCATTGAGAATGCTAAACATGCAAAAGAAAATGAACTAATAGCCAAGAGAGAAAAACTGATTTTGGAAATAGAAAAAGAATCACGTCGCATGGAGGAGTTCACCGAGTTTGCAGAACTGGACCGCATGCATCAG
Seq C2 exon
TATGTGGCAGATGTAAGACAACTGCAGAAACGGATTCAGGAATCGGAAGAAGCTGTTCAGTTTATTAATAAAGAAGAGGAACTTTTCAAATGGGAATTGACAAAGTATCCTGAGCTGGAAAAATTAAAAGTCACCATTGAGCCCTACCAGAAGTTTTTTAATTTTGTTCTGAAGTGGCAGCGAACAGAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'5-17,'5-16,15-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(6.3=43.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAACTGTCCTCTTGTGGC
R:
CTGTTCGCTGCCACTTCAGAA
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types