RnoEX6054508 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2407858-2409786:+
Coord C1 exon
chr16:2407858-2407983
Coord A exon
chr16:2409151-2409285
Coord C2 exon
chr16:2409593-2409786
Length
135 bp
Sequences
Splice sites
3' ss Seq
TAAATTATCTTTTTAAAAAGCTC
3' ss Score
4.33
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GAATCTAAACGCCAAATGGGTTACTTTTTAGATACTTTTCTATTGTCTCAAGAAGATTTAAATTTAAATGCAAGTGTCCTCTTGTGGCCTAGTAAAATTAACCCCGTCTTTGATGAGAATGATGAA
Seq A exon
CTCATTGAGAATTCTAAACGTACGAAAGAAAATGAACTAATAGCCAAGAGAGAGAAACTGATTTTGGAAATAGAAAAAGAGTCGCGCCGCATGGAGGAGTTCACAGAGTTTGCAGAACTGGACCGCATGCAACAG
Seq C2 exon
TATGTGGCAGATGTAAGACATCTACAGAAACGTATTCAGGATTCGGAAGAAGCTGTCCAGTTTATTAATAAAGAAGAGGAACTTTTCAAATGGGAATTGACAAAGTATCCTGAACTGGAAAAATTAAAAGTCACCATTGAACCCTACCAGAAGTTTTTCAATTTTGTTCTGAAGTGGCAGCGAACAGAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(11.3=43.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAAGTGTCCTCTTGTGGC
R:
CTGTTCGCTGCCACTTCAGAA
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]